Deshmukh Group

  1. 2024
  2. Published

    Exercise-induced crosstalk between immune cells and adipocytes in humans: Role of oncostatin-M

    Dollet, L., Lundell, L. S., Chibalin, A. V., Pendergrast, L. A., Pillon, N. J., Lansbury, Elizabeth Laura, Elmastas, M., Frendo-Cumbo, S., Jalkanen, J., de Castro Barbosa, T., Cervone, D. T., Caidahl, K., Dmytriyeva, O., Deshmukh, Atul Shahaji, Barrès, Romain, Rydén, M., Wallberg-Henriksson, H., Zierath, Juleen R & Krook, A., 2024, In: Cell Reports Medicine. 5, 1, 20 p., 101348.

    Research output: Contribution to journalJournal articlepeer-review

  3. E-pub ahead of print

    Harnessing the power of proteomics in precision diabetes medicine

    Kurgan, Nigel Kilty, Larsen, Jeppe Kjærgaard & Deshmukh, Atul Shahaji, 2024, (E-pub ahead of print) In: Diabetologia.

    Research output: Contribution to journalReviewpeer-review

  4. Published

    Mass spectrometry-based proteomics approaches to interrogate skeletal muscle adaptations to exercise

    Cervone, D. T., Moreno Justicia, Roger, Prats Quesada, Júlia & Deshmukh, Atul Shahaji, 2024, In: Scandinavian Journal of Medicine and Science in Sports. 34, 1, 17 p.

    Research output: Contribution to journalJournal articlepeer-review

  5. Published

    Plasma proteome profiling reveals metabolic and immunologic differences between Anorexia Nervosa subtypes

    Samodova-Sommer, Diana, Hoel, A., Hansen, T. H., Clausen, L., Telléus, G. K., Marti, H. P., Pedersen, Oluf Borbye, Støving, R. K. & Deshmukh, Atul Shahaji, 2024, In: Metabolism: Clinical and Experimental. 152, 11 p., 155760.

    Research output: Contribution to journalJournal articlepeer-review

  6. Published
  7. 2023
  8. Published

    Adipogenic and SWAT cells separate from a common progenitor in human brown and white adipose depots

    Palani, Nagendra Prasad, Horvath, C., Timshel, P. N., Folkertsma, P., Grønning, Alexander GB, Henriksen, T. I., Peijs, Lone, Jensen, V. H., Sun, W., Jespersen, N. Z., Wolfrum, C., Pers, Tune H, Nielsen, S. & Schéele, Camilla Charlotte Nielsen, 2023, In: Nature Metabolism. 5, 6, p. 996-1013 18 p.

    Research output: Contribution to journalJournal articlepeer-review

  9. Published

    CaMKK2 is not involved in contraction-stimulated AMPK activation and glucose uptake in skeletal muscle

    Negoita, F., Addinsall, A. B., Hellberg, K., Bringas, C. F., Hafen, P. S., Sermersheim, T. J., Agerholm, M., Lewis, C. T. A., Ahwazi, D., Ling, N. X. Y., Larsen, J. K., Deshmukh, A. S., Hossain, M. A., Oakhill, J. S., Ochala, J., Brault, J. J., Sankar, U., Drewry, D. H., Scott, J. W., Witczak, C. A. & 1 others, Sakamoto, Kei, 2023, In: Molecular Metabolism. 75, 14 p., 101761.

    Research output: Contribution to journalJournal articlepeer-review

  10. Published

    High-throughput proteomics uncovers exercise training and type 2 diabetes-induced changes in human white adipose tissue

    Larsen, Jeppe Kjærgaard, Kruse, R., Sahebekhtiari, N., Moreno Justicia, Roger, Jorba, G. G., Petersen, M. H., de Almeida, M. E., Ørtenblad, N., Deshmukh, Atul Shahaji & Højlund, K., 2023, In: Science Advances. 9, 48, 16 p., eadi7548.

    Research output: Contribution to journalJournal articlepeer-review

  11. Published

    Metabolic changes and propensity for inflammation, fibrosis, and cancer in livers of mice lacking lysosomal acid lipase

    Bradić, I., Liesinger, L., Kuentzel, K. B., Vujić, N., Trauner, M., Birner-Gruenberger, R. & Kratky, D., 2023, In: Journal of Lipid Research. 64, 9, 12 p., 100427.

    Research output: Contribution to journalJournal articlepeer-review

  12. Published
  13. 2022
  14. Published

    Exercise timing influences multi-tissue metabolome and skeletal muscle proteome profiles in type 2 diabetic patients - A randomized crossover trial

    Savikj, M., Stocks, Ben Nicholas, Sato, S., Caidahl, K., Krook, A., Deshmukh, Atul Shahaji, Zierath, Juleen R & Wallberg-Henriksson, H., 2022, In: Metabolism. 135, 14 p., 155268.

    Research output: Contribution to journalJournal articlepeer-review

  15. Published

    High-intensity interval training remodels the proteome and acetylome of human skeletal muscle

    Hostrup, Morten, Lemminger, A. K., Stocks, Ben Nicholas, Gonzalez-Franquesa, A., Larsen, Jeppe Kjærgaard, Prats Quesada, Júlia, Thomassen, Martin, Weinert, B. T., Bangsbo, Jens & Deshmukh, Atul Shahaji, 2022, In: eLife. 11, 37 p., 69802.

    Research output: Contribution to journalJournal articlepeer-review

  16. Published

    Illumination of the endogenous insulin-regulated TBC1D4 interactome in human skeletal muscle

    Larsen, Jeppe Kjærgaard, Larsen, Magnus Romme, Birk, Jesper Bratz, Steenberg, D. E., Hingst, J. R., Højlund, K., Chadt, A., Al-Hasani, H., Deshmukh, Atul Shahaji, Wojtaszewski, Jørgen F P & Kjøbsted, Rasmus, 2022, In: Diabetes. 71, 5, p. 906-920

    Research output: Contribution to journalJournal articlepeer-review

  17. Published

    Integrated Liver and Plasma Proteomics in Obese Mice Reveals Complex Metabolic Regulation

    Stocks, Ben Nicholas, Gonzalez-Franquesa, A., Borg, M. L., Björnholm, M., Niu, Lili, Zierath, Juleen R & Deshmukh, Atul Shahaji, 2022, In: Molecular and Cellular Proteomics. 21, 3, 19 p., 100207.

    Research output: Contribution to journalJournal articlepeer-review

  18. Published

    Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues

    Diamanti, K., Cavalli, M., Pereira, M. J., Pan, G., Castillejo-López, C., Kumar, C., Mundt Madsen, Filip Oskar, Komorowski, J., Deshmukh, Atul Shahaji, Mann, Matthias, Korsgren, O., Eriksson, J. W. & Wadelius, C., 2022, In: Cell Reports Medicine. 3, 10, 21 p., 100763.

    Research output: Contribution to journalJournal articlepeer-review

  19. Published

    Protocol to characterize mitochondrial supercomplexes from mouse tissues by combining BN-PAGE and MS-based proteomics

    Moreno Justicia, Roger, Gonzalez-Franquesa, A., Stocks, Ben Nicholas & Deshmukh, Atul Shahaji, 2022, In: STAR Protocols. 3, 1, 21 p., 101135.

    Research output: Contribution to journalJournal articlepeer-review

  20. Published

    Remission of obesity and insulin resistance is not sufficient to restore mitochondrial homeostasis in visceral adipose tissue

    Gonzalez-Franquesa, A., Gama-Perez, P., Kulis, M., Szczepanowska, K., Dahdah, N., Moreno-Gomez, S., Latorre-Pellicer, A., Fernández-Ruiz, R., Aguilar-Mogas, A., Hoffman, A., Monelli, E., Samino, S., Miró-Blanch, J., Oemer, G., Duran, X., Sanchez-Rebordelo, E., Schneeberger, M., Obach, M., Montane, J., Castellano, G. & 27 others, Chapaprieta, V., Sun, W., Navarro, L., Prieto, I., Castaño, C., Novials, A., Gomis, R., Monsalve, M., Claret, M., Graupera, M., Soria, G., Wolfrum, C., Vendrell, J., Fernández-Veledo, S., Enríquez, J. A., Carracedo, A., Perales, J. C., Nogueiras, R., Herrero, L., Trifunovic, A., Keller, M. A., Yanes, O., Sales-Pardo, M., Guimerà, R., Blüher, M., Martín-Subero, J. I. & Garcia-Roves, P. M., 2022, In: Redox Biology. 54, 18 p., 102353.

    Research output: Contribution to journalJournal articlepeer-review

  21. Published

    The proteomic profile of the human myotendinous junction

    Karlsen, Anders, Gonzalez-Franquesa, A., Jakobsen, J. R., Krogsgaard, Michael R., Koch, M., Kjær, Michael, Schiaffino, S., Mackey, Abigail & Deshmukh, Atul Shahaji, 2022, In: iScience. 25, 2, 19 p.

    Research output: Contribution to journalJournal articlepeer-review

  22. 2021
  23. Published
  24. Published

    Discovery of thymosin β4 as a human exerkine and growth factor

    Gonzalez-Franquesa, A., Stocks, Ben Nicholas, Borg, M. L., Kuefner, M., Kellezi, Emilie Dalbram, Nielsen, Thomas Svava, Agrawal, A., Pankratova, Stanislava, Chibalin, A. V., Karlsson, H. K. R., Gheibi, S., Björnholm, M., Jørgensen, Niklas Rye, Clemmensen, Christoffer, Treebak, Jonas Thue, Hostrup, Morten, Krook, A., Zierath, Juleen R & Deshmukh, Atul Shahaji, 2021, In: American Journal of Physiology: Cell Physiology. 321, 5, p. C770-C778 9 p.

    Research output: Contribution to journalJournal articlepeer-review

  25. Published

    Insulin and 5-aminoimidazole-4-carboxamide ribonucleotide (Aicar) differentially regulate the skeletal muscle cell secretome

    Gonzalez-Franquesa, A., Peijs, Lone, Cervone, D. T., Koçana, C., Zierath, Juleen R & Deshmukh, Atul Shahaji, 2021, In: Proteomes. 9, 3, 16 p., 37.

    Research output: Contribution to journalJournal articlepeer-review

  26. Published

    Mass-spectrometry-based proteomics reveals mitochondrial supercomplexome plasticity

    Gonzalez-Franquesa, A., Stocks, Ben Nicholas, Chubanava, Sabina, Hattel, H. B., Moreno Justicia, Roger, Peijs, Lone, Treebak, Jonas Thue, Zierath, Juleen R & Deshmukh, Atul Shahaji, 2021, In: Cell Reports. 35, 8, 20 p., 109180.

    Research output: Contribution to journalJournal articlepeer-review

  27. 2020
  28. Published

    A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver

    Cavalli, M., Diamanti, K., Pan, G., Spalinskas, R., Kumar, C., Deshmukh, Atul Shahaji, Mann, Matthias, Sahlén, P., Komorowski, J. & Wadelius, C., 2020, In: O M I C S: A Journal of Integrative Biology. 24, 4, 15 p.

    Research output: Contribution to journalJournal articlepeer-review

  29. Published
  30. Published

    Human thermogenic adipocyte regulation by the long noncoding RNA LINC00473

    Khanh-Van Tran, Brown, E. L., DeSouza, T., Jespersen, N. Z., Nandrup-Bus, C., Yang, Q., Yang, Z., Desai, A., Min, S. Y., Rojas-Rodriguez, R., Lundh, M., Feizi, A., Willenbrock, H., Larsen, T. J., Severinsen, M. C. K., Malka, K., Mozzicato, A. M., Deshmukh, A. S., Emanuelli, B., Pedersen, B. K. & 4 others, Fitzgibbons, T., Schéele, Camilla Charlotte Nielsen, Corvera, S. & Nielsen, S., 2020, In: Nature Metabolism. 2, p. 397-412

    Research output: Contribution to journalJournal articlepeer-review

  31. Published

    ProAlanase is an Effective Alternative to Trypsin for Proteomics Applications and Disulfide Bond Mapping

    Samodova-Sommer, Diana, Hosfield, C. M., Cramer, C. N., Giuli, M. V., Cappellini, Enrico, Franciosa, Giulia, Rosenblatt, M. M., Kelstrup, C. D. & Olsen, Jesper Velgaard, 2020, In: Molecular & Cellular Proteomics. 19, 12, 19 p.

    Research output: Contribution to journalJournal articlepeer-review

  32. 2016
  33. Published

    Proteomics of Skeletal Muscle: Focus on Insulin Resistance and Exercise Biology.

    Deshmukh, Atul Shahaji, 4 Feb 2016, In: Proteomes.

    Research output: Contribution to journalJournal articlepeer-review

  34. Published

    Multi-technique approach for qualitative and quantitative characterization of furazidin degradation kinetics under alkaline conditions

    Bērziņš, Kārlis, Kons, A., Grante, I., Samodova-Sommer, Diana, Nakurte, I. & Actiņš, A., 2016, In: Journal of Pharmaceutical and Biomedical Analysis.

    Research output: Contribution to journalJournal articlepeer-review