miRSeqNovel: an R based workflow for analyzing miRNA sequencing data
Research output: Contribution to journal › Journal article › Research › peer-review
We present miRSeqNovel, an R based workflow for miRNA sequencing data analysis. miRSeqNovel can process both colorspace (SOLiD) and basespace (Illumina/Solexa) data by different mapping algorithms. It finds differentially expressed miRNAs and gives conservative prediction of novel miRNA candidates with customized parameters. miRSeqNovel is freely available at http://sourceforge.net/projects/mirseq/files.
| Original language | English |
|---|---|
| Journal | Molecular and Cellular Probes |
| Volume | 26 |
| Issue number | 5 |
| Pages (from-to) | 208-11 |
| Number of pages | 4 |
| ISSN | 0890-8508 |
| DOIs | |
| Publication status | Published - Oct 2012 |
- Algorithms, Arabidopsis, Humans, MicroRNAs, Sequence Analysis, RNA, Software
Research areas
ID: 95706258