Multi-ancestry genome-wide association study of major depression aids locus discovery, fine mapping, gene prioritization and causal inference

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  • Xiangrui Meng
  • Georgina Navoly
  • Olga Giannakopoulou
  • Daniel F. Levey
  • Dora Koller
  • Gita A. Pathak
  • Nastassja Koen
  • Kuang Lin
  • Mark J. Adams
  • Miguel E. Rentería
  • Yanzhe Feng
  • J. Michael Gaziano
  • Dan J. Stein
  • Heather J. Zar
  • Megan L. Campbell
  • David A. van Heel
  • Bhavi Trivedi
  • Sarah Finer
  • Andrew McQuillin
  • Nick Bass
  • V. Kartik Chundru
  • Hilary C. Martin
  • Qin Qin Huang
  • Maria Valkovskaya
  • Chia Yi Chu
  • Susan Kanjira
  • Po Hsiu Kuo
  • Hsi Chung Chen
  • Shih Jen Tsai
  • Yu Li Liu
  • Kenneth S. Kendler
  • Roseann E. Peterson
  • Na Cai
  • Yu Fang
  • Srijan Sen
  • Laura J. Scott
  • Margit Burmeister
  • Michael H. Preuss
  • Ky’Era E.V. Actkins
  • Lea K. Davis
  • Monica Uddin
  • Agaz H. Wani
  • Derek E. Wildman
  • Allison E. Aiello
  • Robert J. Ursano
  • Ronald C. Kessler
  • Masahiro Kanai
  • Yukinori Okada
  • Saori Sakaue
  • Jill A. Rabinowitz
  • Brion S. Maher
  • George Uhl
  • William Eaton
  • Carlos S. Cruz-Fuentes
  • Gabriela A. Martinez-Levy
  • Adrian I. Campos
  • Iona Y. Millwood
  • Zhengming Chen
  • Liming Li
  • Sylvia Wassertheil-Smoller
  • Yunxuan Jiang
  • Chao Tian
  • Nicholas G. Martin
  • Brittany L. Mitchell
  • Enda M. Byrne
  • Swapnil Awasthi
  • Jonathan R.I. Coleman
  • Stephan Ripke
  • Tamar Sofer
  • Robin G. Walters
  • Andrew M. McIntosh
  • Renato Polimanti
  • Erin C. Dunn
  • Murray B. Stein
  • Joel Gelernter
  • Cathryn M. Lewis
  • Karoline Kuchenbaecker

Most genome-wide association studies (GWAS) of major depression (MD) have been conducted in samples of European ancestry. Here we report a multi-ancestry GWAS of MD, adding data from 21 cohorts with 88,316 MD cases and 902,757 controls to previously reported data. This analysis used a range of measures to define MD and included samples of African (36% of effective sample size), East Asian (26%) and South Asian (6%) ancestry and Hispanic/Latin American participants (32%). The multi-ancestry GWAS identified 53 significantly associated novel loci. For loci from GWAS in European ancestry samples, fewer than expected were transferable to other ancestry groups. Fine mapping benefited from additional sample diversity. A transcriptome-wide association study identified 205 significantly associated novel genes. These findings suggest that, for MD, increasing ancestral and global diversity in genetic studies may be particularly important to ensure discovery of core genes and inform about transferability of findings.

Original languageEnglish
JournalNature Genetics
Volume56
Issue number2
Pages (from-to)222–233
ISSN1061-4036
DOIs
Publication statusPublished - 2024

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© 2024, The Author(s).

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