Mikkel Schubert

Mikkel Schubert

head of section, secretary

ORCID: 0000-0003-2401-9921

Publication year:
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1 - 10 out of 33Page size: 10
  1. 2012
  2. Published

    Improving ancient DNA read mapping against modern reference genomes

    Schubert, Mikkel, Ginolhac, A., Lindgreen, S., Thompson, J. F., Al-Rasheid, K. A. S., Willerslev, Eske, Krogh, Anders & Orlando, L. A. A., 2012, In: BMC Genomics. 13, 15 p., 178.

    Research output: Contribution to journal › Journal article › Research › peer-review

  3. 2013
  4. Published

    mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

    Jónsson, H., Ginolhac, A., Schubert, Mikkel, Johnson, P. L. F. & Orlando, L. A. A., 1 Jul 2013, In: Bioinformatics. 29, 13, p. 1682-1684 3 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  5. Published

    Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse

    Orlando, L. A. A., Ginolhac, A., Zhang, G., Froese, D., Albrechtsen, A., Stiller, M., Schubert, M., Cappellini, E., Petersen, B., Moltke, I., Johnson, P. L. F., Fumagalli, M., Mouatt, J. T. V., Raghavan, M., Korneliussen, T. S., Malaspinas, A. S., Vogt, J., Szklarczyk, D. M., Kelstrup, C., Vinther, J. & 36 others, Dolocan, A., Stenderup, Jesper Tandberg, Velazquez, A. M. V., Cahill, J., Rasmussen, M., Wang, X., Min, J., Zazula, G. D., Seguin-Orlando, A., Mortensen, C., Magnussen, K., Thompson, J. F., Weinstock, J., Gregersen, K., Røed, K. H., Eisenmann, V., Rubin, C. J., Miller, D. C., Antczak, D. F., Bertelsen, M. F., Brunak, S., Al-Rasheid, K. A. S., Ryder, O., Andersson, L., Mundy, J., Krogh, Anders, Gilbert, M Thomas P, Kjær, Kurt H., Sicheritz-Pontén, T., Jensen, Lars Juhl, Olsen, Jesper Velgaard, Hofreiter, M., Nielsen, R., Shapiro, B., Wang, J. & Willerslev, Eske, 4 Jul 2013, In: Nature. 499, 7456, p. 74-78 5 p.

    Research output: Contribution to journal › Letter › Research › peer-review

  6. Published

    Ligation bias in Illumina next-generation DNA libraries: implications for sequencing ancient genomes

    Seguin-Orlando, A., Schubert, Mikkel, Clary, J., Stagegaard, J., Alberdi, M. T., Prado, J. L., Prieto, A., Willerslev, Eske & Orlando, L. A. A., 29 Oct 2013, In: PLoS ONE. 8, 10, 11 p., e78575.

    Research output: Contribution to journal › Journal article › Research › peer-review

  7. 2014
  8. Published

    Characterization of ancient and modern genomes by SNP detection and phylogenomic and metagenomic analysis using PALEOMIX

    Schubert, Mikkel, Ermini, L., Der Sarkissian, C., Jónsson, H., Ginolhac, A., Schaefer, R., Martin, M. D., Fernandez Garcia, R., Kircher, M., McCue, M., Willerslev, Eske & Orlando, L. A. A., 2014, In: Nature Protocols. 9, 5, p. 1056-82 27 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  9. Published

    Comparative genomics reveals insights into avian genome evolution and adaptation

    Zhang, G., Li, C., Li, Q., Li, B., Larkin, D. M., Lee, C., Storz, J. F., Antunes, A., Greenwold, M. J., Meredith, R. W., Ödeen, A., Cui, J., Zhou, Q., Xu, L., Pan, H., Wang, Z., Jin, L., Zhang, P., Hu, H., Yang, W. & 85 others, Hu, J., Xiao, J., Yang, Z., Liu, Y., Xie, Q., Yu, H., Lian, J., Wen, P., Zhang, F., Li, H., Zeng, Y., Xiong, Z., Liu, S., Zhou, L., Huang, Z., An, N., Wang, J., Zheng, Q., Xiong, Y., Wang, G., Wang, B., Wang, J., Fan, Y., Rodrigues da Fonseca, Rute Andreia, Alfaro Nuñez, L. A., Schubert, Mikkel, Orlando, L. A. A., Mourier, T., Howard, J. T., Ganapathy, G., Pfenning, A., Whitney, O., Rivas, M. V., Hara, E., Smith, J., Farré, M., Narayan, J., Slavov, G., Romanov, M. N., Borges, R., MacHado, J. P., Khan, I., Springer, M. S., Gatesy, J., Hoffmann, F. G., Opazo, J. C., Håstad, O., Sawyer, R. H., Kim, H., Kim, K. W., Kim, H. J., Cho, S., Li, N., Huang, Y., Bruford, M. W., Zhan, X., Dixon, A., Bertelsen, Mads Frost, Derryberry, E., Warren, W., Wilson, R. K., Li, S., Ray, D. A., Green, R. E., O'Brien, S. J., Griffin, D., Johnson, W. E., Haussler, D., Ryder, O. A., Willerslev, Eske, Graves, G. R., Alström, P., Fjeldså, Jon, Mindell, D. P., Edwards, S. V., Braun, E. L., Rahbek, Carsten, Burt, D. W., Houde, P., Zhang, Y., Yang, H., Wang, J., Jarvis, E. D., Gilbert, M Thomas P & Wang, J., 2014, In: Science. 346, 6215, p. 1311-1320 10 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  10. Published

    Prehistoric genomes reveal the genetic foundation and cost of horse domestication

    Schubert, M., Jónsson, H., Chang, D., Der Sarkissian, C., Ermini, L., Ginolhac, A., Albrechtsen, A., Dupanloup, I., Foucal, A., Petersen, B., Fumagalli, M., Raghavan, M., Seguin-Orlando, A., Korneliussen, T. S., Velazquez, A. M. V., Stenderup, J., Hoover, C. A., Rubin, C-J., Alfarhan, A. H., Alquraishi, S. A. & 15 others, Al-Rasheid, K. A. S., MacHugh, D. E., Kalbfleisch, T., MacLeod, J. N., Rubin, E. M., Sicheritz-Ponten, T., Andersson, L., Hofreiter, M., Marques-Bonet, T., Gilbert, M Thomas P, Nielsen, R., Excoffier, L., Willerslev, Eske, Shapiro, B. & Orlando, L. A. A., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 52, p. E5661–E5669 9 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  11. Published

    Speciation with gene flow in equids despite extensive chromosomal plasticity

    Jónsson, H., Schubert, M., Seguin-Orlando, A., Ginolhac, A., Petersen, L., Fumagalli, M., Albrechtsen, A., Petersen, B., Korneliussen, T. S., Mouatt, J. T. V., Lear, T., Myka, J. L., Lundquist, J., Miller, D. C., Alfarhan, A. H., Alquraishi, S. A., Al-Rasheid, K. A. S., Stagegaard, J., Strauss, G., Bertelsen, M. F. & 6 others, Sicheritz-Ponten, T., Antczak, D. F., Bailey, E., Nielsen, R., Willerslev, Eske & Orlando, L. A. A., 2014, In: Proceedings of the National Academy of Sciences of the United States of America. 111, 52, p. 18655–18660 6 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

  12. 2015
  13. Published

    Ancient genomics

    Der Sarkissian, C., Allentoft, M. E., Avila Arcos, M. D. C., Barnett, R., Campos, P. F., Cappellini, E., Ermini, L., Fernandez Garcia, R., Rodrigues da Fonseca, R. A., Ginolhac, A., Hansen, A. J., Jónsson, H., Korneliussen, T. S., Margaryan, A., Martin, M. D., Moreno Mayar, J. V., Raghavan, M., Rasmussen, M., Sandoval Velasco, M., Schroeder, H. & 6 others, Schubert, Mikkel, Seguin-Orlando, A., Wales, N., Gilbert, M Thomas P, Willerslev, Eske & Orlando, L. A. A., 2015, In: Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1660, 12 p., 20130387.

    Research output: Contribution to journal › Review › Research › peer-review

  14. Published

    Early divergent strains of Yersinia pestis in Eurasia 5,000 years ago

    Rasmussen, S., Allentoft, M. E., Nielsen, K., Orlando, L. A. A., Sikora, M., Sjögren, K-G., Pedersen, A. G., Schubert, M., Van Dam, A., Kapel, C. M. O., Nielsen, H. B., Brunak, S., Avetisyan, P., Epimakhov, A., Khalyapin, M. V., Gnuni, A., Kriiska, A., Lasak, I., Metspalu, M., Moiseyev, V. & 11 others, Gromov, A., Pokutta, D., Saag, L., Varul, L., Yepiskoposyan, L., Sicheritz-Ponten, T., Foley, R. A., Lahr, M. M., Nielsen, R., Kristiansen, K. & Willerslev, Eske, 2015, In: Cell. 163, 3, p. 571-582 12 p.

    Research output: Contribution to journal › Journal article › Research › peer-review

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ID: 336978246