Atul Shahaji Deshmukh
Associate Professor
Deshmukh Group
Blegdamsvej 3B, Mærsk Tårnet, 8. sal
2200 København N.
- 2024
- Published
Mass spectrometry-based proteomics approaches to interrogate skeletal muscle adaptations to exercise
Cervone, D. T., Moreno Justicia, Roger, Prats Quesada, Júlia & Deshmukh, Atul Shahaji, 2024, In: Scandinavian Journal of Medicine and Science in Sports. 34, 1, 17 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exercise-induced crosstalk between immune cells and adipocytes in humans: Role of oncostatin-M
Dollet, L., Lundell, L. S., Chibalin, A. V., Pendergrast, L. A., Pillon, N. J., Lansbury, Elizabeth Laura, Elmastas, M., Frendo-Cumbo, S., Jalkanen, J., de Castro Barbosa, T., Cervone, D. T., Caidahl, K., Dmytriyeva, O., Deshmukh, Atul Shahaji, Barrès, Romain, Rydén, M., Wallberg-Henriksson, H., Zierath, Juleen R & Krook, A., 2024, In: Cell Reports Medicine. 5, 1, 20 p., 101348.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Targeting postsynaptic glutamate receptor scaffolding proteins PSD-95 and PICK1 for obesity treatment
Fadahunsi, N., Petersen, J. O., Metz, S., Jakobsen, A., Mathiesen, C. V., Buch-Rasmussen, A. S., Kurgan, N. K., Larsen, J. K., Andersen, R. C., Topilko, T., Svendsen, C., Apuschkin, M., Skovbjerg, G., Schmidt, J. H., Houser, G. A., Jager, S. E., Bach, A., Deshmukh, A. S., Kilpeläinen, T. O., Strømgaard, K. & 2 others, , 2024, In: Science Advances. 10, 9, 20 p., eadg2636.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Harnessing the power of proteomics in precision diabetes medicine
Kurgan, Nigel Kilty, Larsen, Jeppe Kjærgaard & Deshmukh, Atul Shahaji, 2024, In: Diabetologia. 67, 5, p. 783–797Research output: Contribution to journal › Review › Research › peer-review
- Published
Plasma proteome profiling reveals metabolic and immunologic differences between Anorexia Nervosa subtypes
Samodova, D., Hoel, A., Hansen, T. H., Clausen, L., Telléus, G. K., Marti, H. P., Pedersen, Oluf Borbye, Støving, R. K. & Deshmukh, Atul Shahaji, 2024, In: Metabolism: Clinical and Experimental. 152, 11 p., 155760.Research output: Contribution to journal › Journal article › Research › peer-review
- 2023
- Published
High-throughput proteomics uncovers exercise training and type 2 diabetes-induced changes in human white adipose tissue
Larsen, Jeppe Kjærgaard, Kruse, R., Sahebekhtiari, N., Moreno Justicia, Roger, Jorba, G. G., Petersen, M. H., de Almeida, M. E., Ørtenblad, N., Deshmukh, Atul Shahaji & Højlund, K., 2023, In: Science Advances. 9, 48, 16 p., eadi7548.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
CaMKK2 is not involved in contraction-stimulated AMPK activation and glucose uptake in skeletal muscle
Negoita, F., Addinsall, A. B., Hellberg, K., Bringas, C. F., Hafen, P. S., Sermersheim, T. J., Agerholm, M., Lewis, C. T. A., Ahwazi, D., Ling, N. X. Y., Larsen, J. K., Deshmukh, A. S., Hossain, M. A., Oakhill, J. S., Ochala, J., Brault, J. J., Sankar, U., Drewry, D. H., Scott, J. W., Witczak, C. A. & 1 others, , 2023, In: Molecular Metabolism. 75, 14 p., 101761.Research output: Contribution to journal › Journal article › Research › peer-review
- 2022
- Published
Organ-specific metabolic pathways distinguish prediabetes, type 2 diabetes, and normal tissues
Diamanti, K., Cavalli, M., Pereira, M. J., Pan, G., Castillejo-López, C., Kumar, C., Mundt Madsen, Filip Oskar, Komorowski, J., Deshmukh, Atul Shahaji, Mann, Matthias, Korsgren, O., Eriksson, J. W. & Wadelius, C., 2022, In: Cell Reports Medicine. 3, 10, 21 p., 100763.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exercise suppresses tumor growth independent of high fat food intake and associated immune dysfunction
Hojman, P., Stagaard, Rikke, Adachi-Fernandez, E., Deshmukh, Atul Shahaji, Mund, Andreas, Olsen, C. H., Keller, L., Pedersen, Bente Klarlund & Gehl, Julie, 2022, In: Scientific Reports. 12, 1, 5476.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
High-intensity interval training remodels the proteome and acetylome of human skeletal muscle
Hostrup, Morten, Lemminger, A. K., Stocks, Ben Nicholas, Gonzalez-Franquesa, A., Larsen, Jeppe Kjærgaard, Prats Quesada, Júlia, Thomassen, Martin, Weinert, B. T., Bangsbo, Jens & Deshmukh, Atul Shahaji, 2022, In: eLife. 11, 37 p., 69802.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The proteomic profile of the human myotendinous junction
Karlsen, Anders, Gonzalez-Franquesa, A., Jakobsen, J. R., Krogsgaard, Michael R., Koch, M., Kjær, Michael, Schiaffino, S., Mackey, Abigail & Deshmukh, Atul Shahaji, 2022, In: iScience. 25, 2, 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Illumination of the endogenous insulin-regulated TBC1D4 interactome in human skeletal muscle
Larsen, Jeppe Kjærgaard, Larsen, Magnus Romme, Birk, Jesper Bratz, Steenberg, D. E., Hingst, J. R., Højlund, K., Chadt, A., Al-Hasani, H., Deshmukh, Atul Shahaji, Wojtaszewski, Jørgen F P & Kjøbsted, Rasmus, 2022, In: Diabetes. 71, 5, p. 906-920Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Protocol to characterize mitochondrial supercomplexes from mouse tissues by combining BN-PAGE and MS-based proteomics
Moreno Justicia, Roger, Gonzalez-Franquesa, A., Stocks, Ben Nicholas & Deshmukh, Atul Shahaji, 2022, In: STAR Protocols. 3, 1, 21 p., 101135.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Exercise timing influences multi-tissue metabolome and skeletal muscle proteome profiles in type 2 diabetic patients - A randomized crossover trial
Savikj, M., Stocks, Ben Nicholas, Sato, S., Caidahl, K., Krook, A., Deshmukh, Atul Shahaji, Zierath, Juleen R & Wallberg-Henriksson, H., 2022, In: Metabolism. 135, 14 p., 155268.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Integrated Liver and Plasma Proteomics in Obese Mice Reveals Complex Metabolic Regulation
Stocks, Ben Nicholas, Gonzalez-Franquesa, A., Borg, M. L., Björnholm, M., Niu, Lili, Zierath, Juleen R & Deshmukh, Atul Shahaji, 2022, In: Molecular and Cellular Proteomics. 21, 3, 19 p., 100207.Research output: Contribution to journal › Journal article › Research › peer-review
- 2021
- Published
Deep muscle-proteomic analysis of freeze-dried human muscle biopsies reveals fiber type-specific adaptations to exercise training
Deshmukh, Atul Shahaji, Steenberg, D. E., Hostrup, Morten, Birk, Jesper Bratz, Larsen, Jeppe Kjærgaard, Santos, A., Kjøbsted, Rasmus, Hingst, J. R., Schéele, Camilla Charlotte Nielsen, Murgia, M., Kiens, Bente, Richter, Erik A., Mann, Matthias & Wojtaszewski, Jørgen F P, 2021, In: Nature Communications. 12, 15 p., 304.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Discovery of thymosin β4 as a human exerkine and growth factor
Gonzalez-Franquesa, A., Stocks, Ben Nicholas, Borg, M. L., Kuefner, M., Kellezi, Emilie Dalbram, Nielsen, Thomas Svava, Agrawal, A., Pankratova, Stanislava, Chibalin, A. V., Karlsson, H. K. R., Gheibi, S., Björnholm, M., Jørgensen, Niklas Rye, Clemmensen, Christoffer, Treebak, Jonas Thue, Hostrup, Morten, Krook, A., Zierath, Juleen R & Deshmukh, Atul Shahaji, 2021, In: American Journal of Physiology: Cell Physiology. 321, 5, p. C770-C778 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Insulin and 5-aminoimidazole-4-carboxamide ribonucleotide (Aicar) differentially regulate the skeletal muscle cell secretome
Gonzalez-Franquesa, A., Peijs, Lone, Cervone, D. T., Koçana, C., Zierath, Juleen R & Deshmukh, Atul Shahaji, 2021, In: Proteomes. 9, 3, 16 p., 37.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mass-spectrometry-based proteomics reveals mitochondrial supercomplexome plasticity
Gonzalez-Franquesa, A., Stocks, Ben Nicholas, Chubanava, Sabina, Hattel, H. B., Moreno Justicia, Roger, Peijs, Lone, Treebak, Jonas Thue, Zierath, Juleen R & Deshmukh, Atul Shahaji, 2021, In: Cell Reports. 35, 8, 20 p., 109180.Research output: Contribution to journal › Journal article › Research › peer-review
- 2020
- Published
A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver
Cavalli, M., Diamanti, K., Pan, G., Spalinskas, R., Kumar, C., Deshmukh, Atul Shahaji, Mann, Matthias, Sahlén, P., Komorowski, J. & Wadelius, C., 2020, In: O M I C S: A Journal of Integrative Biology. 24, 4, 15 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Human thermogenic adipocyte regulation by the long noncoding RNA LINC00473
Khanh-Van Tran, Brown, E. L., DeSouza, T., Jespersen, N. Z., Nandrup-Bus, C., Yang, Q., Yang, Z., Desai, A., Min, S. Y., Rojas-Rodriguez, R., Lundh, M., Feizi, A., Willenbrock, H., Larsen, T. J., Severinsen, M. C. K., Malka, K., Mozzicato, A. M., Deshmukh, A. S., Emanuelli, B., Pedersen, B. K. & 4 others, , 2020, In: Nature Metabolism. 2, p. 397-412Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Atorvastatin for prevention of disease progression and hospitalisation in liver cirrhosis: protocol for a randomised, double-blind, placebo-controlled trial
Kimer, N., Grønbæk, H., Fred, Rikard Göran, Hansen, Torben, Deshmukh, Atul Shahaji, Mann, Matthias & Bendtsen, Flemming, 2020, In: BMJ Open. 10, 1, 7 p., e035284.Research output: Contribution to journal › Journal article › Research › peer-review
- 2019
- Published
Protein aggregation capture on microparticles enables multi-purpose proteomics sample preparation
Batth, Tanveer Singh, Tollenaere, M. A. X., Rüther, P. L., Gonzalez-Franquesa, A., Prabhakar, B. S., Bekker-Jensen, Simon Holst, Deshmukh, Atul Shahaji & Olsen, Jesper Velgaard, 2019, In: Molecular and Cellular Proteomics. 18, 5, p. 1027-1035Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Proteomics-Based Comparative Mapping of the Secretomes of Human Brown and White Adipocytes Reveals EPDR1 as a Novel Batokine
Deshmukh, A. S., Peijs, L., Beaudry, J. L., Jespersen, N. Z., Nielsen, C. H., Ma, T., Brunner, A. D., Larsen, T. J., Bayarri-Olmos, R., Prabhakar, B. S., Helgstrand, C., Severinsen, M. C. K., Holst, B., Kjaer, A., Tang-Christensen, M., Sanfridson, A., Garred, P., Privé, G. G., Pedersen, B. K., Gerhart-Hines, Z. & 4 others, , 2019, In: Cell Metabolism. 30, 5, p. 963-975.e7 21 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Mechanisms preserving insulin action during high dietary fat intake
Lundsgaard, Anne-Marie, Holm, J. B., Sjøberg, K. A., Bojsen-Møller, K. N., Myrmel, L. S., Fjære, E., Jensen, Benjamin Anderschou Holbech, Nicolaisen, T. S., Hingst, J. R., Hansen, S. L., Doll, S., Geyer, P. E., Deshmukh, Atul Shahaji, Holst, Jens Juul, Madsen, L., Kristiansen, Karsten, Wojtaszewski, Jørgen F P, Richter, Erik A. & Kiens, Bente, 2019, In: Cell Metabolism. 29, 1, p. 50-63, e1-e4 19 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2018
- Published
Proteomics Analysis of Skeletal Muscle from Leptin-Deficient ob/ob Mice Reveals Adaptive Remodeling of Metabolic Characteristics and Fiber Type Composition
Schönke, M., Björnholm, M., Chibalin, A. V., Zierath, Juleen R & Deshmukh, Atul Shahaji, 2018, In: Proteomics. 18, 5-6, p. 1-11 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2017
- Published
Progressive resistance training in head and neck cancer patients undergoing concomitant chemoradiotherapy
Lonkvist, C. K., Vinther, A., Zerahn, B., Rosenbom, E., Deshmukh, Atul Shahaji, Hojman, P. & Gehl, Julie, Oct 2017, In: Laryngoscope Investigative Otolaryngology. 2, 5, p. 295-306 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2016
- Published
Insulin-stimulated glucose uptake in healthy and insulin-resistant skeletal muscle
Deshmukh, Atul Shahaji, 1 Apr 2016, In: Hormone Molecular Biology and Clinical Investigation. 26, 1, p. 13-24 12 p.Research output: Contribution to journal › Review › Research › peer-review
- Published
Proteomics of Skeletal Muscle: Focus on Insulin Resistance and Exercise Biology.
Deshmukh, Atul Shahaji, 4 Feb 2016, In: Proteomes.Research output: Contribution to journal › Journal article › Research › peer-review
Diacylglycerol kinase-δ regulates AMPK signaling, lipid metabolism, and skeletal muscle energetics
Jiang, L. Q., de Castro Barbosa, T., Massart, J., Deshmukh, Atul Shahaji, Löfgren, L., Duque-Guimaraes, D. E., Ozilgen, A., Osler, M. E., Chibalin, A. V. & Zierath, Juleen R, 1 Jan 2016, In: American Journal of Physiology: Endocrinology and Metabolism. 310, 1, p. E51-60Research output: Contribution to journal › Journal article › Research › peer-review
- 2015
- Published
Deep proteomics of mouse skeletal muscle enables quantitation of protein isoforms, metabolic pathways and transcription factors
Deshmukh, Atul Shahaji, Murgia, M., Nagaraja, N., Treebak, Jonas Thue, Cox, J. & Mann, Matthias, Apr 2015, In: Molecular and Cellular Proteomics. 14, 4, p. 841-853Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow
Deshmukh, Atul Shahaji, Cox, J., Jensen, Lars Juhl, Meissner, F. & Mann, Matthias, 6 Nov 2015, In: Journal of Proteome Research. 14, 11, p. 4885-95 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Single muscle fiber proteomics reveals unexpected mitochondrial specialization
Murgia, M., Nagaraj, N., Deshmukh, Atul Shahaji, Zeiler, M., Cancellara, P., Moretti, I., Reggiani, C., Schiaffino, S. & Mann, Matthias, 1 Mar 2015, In: E M B O Reports. 16, 3, p. 387-95 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
Absolute quantitative profiling of the key metabolic pathways in slow and fast skeletal muscle
Rakus, D., Gizak, A., Deshmukh, Atul Shahaji & Wiśniewski, J. R., 6 Mar 2015, In: Journal of Proteome Research. 14, 3, p. 1400-11 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2014
- Published
Effects of AMPK activation on insulin sensitivity and metabolism in leptin-deficient ob/ob mice
Zachariah Tom, R., Garcia-Roves, P. M., Sjögren, R. J. O., Jiang, L. Q., Holmström, M. H., Deshmukh, Atul Shahaji, Vieira, E., Chibalin, A. V., Björnholm, M. & Zierath, Juleen R, May 2014, In: Diabetes. 63, 5, p. 1560-71 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2012
- Published
The Rab-GTPase-activating protein TBC1D1 regulates skeletal muscle glucose metabolism
Szekeres, F., Chadt, A., Tom, R. Z., Deshmukh, Atul Shahaji, Chibalin, A. V., Björnholm, M., Al-Hasani, H. & Zierath, Juleen R, 15 Aug 2012, In: American Journal of Physiology: Endocrinology and Metabolism. 303, 4, p. E524-33Research output: Contribution to journal › Journal article › Research › peer-review
- 2011
- Published
Direct effects of FGF21 on glucose uptake in human skeletal muscle: implications for type 2 diabetes and obesity
Mashili, F. L., Austin, R. L., Deshmukh, Atul Shahaji, Fritz, T., Caidahl, K., Bergdahl, K., Zierath, Juleen R, Chibalin, A. V., Moller, D. E., Kharitonenkov, A. & Krook, A., Mar 2011, In: Diabetes - Metabolism: Research and Reviews (Print Edition). 27, 3, p. 286-97 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2010
- Published
Interdependence of AMPK and SIRT1 for metabolic adaptation to fasting and exercise in skeletal muscle
Cantó, C., Jiang, L. Q., Deshmukh, Atul Shahaji, Mataki, C., Coste, A., Lagouge, M., Zierath, Juleen R & Auwerx, J., 3 Mar 2010, In: Cell Metabolism. 11, 3, p. 213-9 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Nitric oxide increases cyclic GMP levels, AMP-activated protein kinase (AMPK)alpha1-specific activity and glucose transport in human skeletal muscle
Deshmukh, Atul Shahaji, Long, Y. C., de Castro Barbosa, T., Karlsson, H. K. R., Glund, S., Zavadoski, W. J., Gibbs, E. M., Koistinen, H. A., Wallberg-Henriksson, H. & Zierath, Juleen R, Jun 2010, In: Diabetologia. 53, 6, p. 1142-50 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2009
Post-transcriptional gene silencing of ribosomal protein S6 kinase 1 restores insulin action in leucine-treated skeletal muscle
Deshmukh, Atul Shahaji, Salehzadeh, F., Metayer-Coustard, S., Fahlman, R., Nair, K. S. & Al-Khalili, L., Apr 2009, In: Cellular and molecular life sciences : CMLS. 66, 8, p. 1457-66 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Role of the AMPKgamma3 isoform in hypoxia-stimulated glucose transport in glycolytic skeletal muscle
Deshmukh, Atul Shahaji, Glund, S., Tom, R. Z. & Zierath, Juleen R, Dec 2009, In: American Journal of Physiology: Endocrinology and Metabolism. 297, 6, p. E1388-94Research output: Contribution to journal › Journal article › Research › peer-review
- 2008
Tbc1d1 mutation in lean mouse strain confers leanness and protects from diet-induced obesity
Chadt, A., Leicht, K., Deshmukh, Atul Shahaji, Jiang, L. Q., Scherneck, S., Bernhardt, U., Dreja, T., Vogel, H., Schmolz, K., Kluge, R., Zierath, Juleen R, Hultschig, C., Hoeben, R. C., Schürmann, A., Joost, H. & Al-Hasani, H., 2008, In: Nature Genetics. 40, 11, p. 1354-1359 6 p.Research output: Contribution to journal › Letter › Research › peer-review
Exercise-induced phospho-proteins in skeletal muscle
Deshmukh, Atul Shahaji, Hawley, J. A. & Zierath, Juleen R, 2008, In: International Journal of Obesity. 32, Suppl. 4, p. S18-S23Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Role of adenosine 5'-monophosphate-activated protein kinase subunits in skeletal muscle mammalian target of rapamycin signaling
Deshmukh, Atul Shahaji, Treebak, Jonas Thue, Long, Y. C., Viollet, B., Wojtaszewski, Jørgen F P & Zierath, J. R., 2008, In: Molecular Endocrinology. 22, 5, p. 1105-12 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2007
Interleukin-6 directly increases glucose metabolism in resting human skeletal muscle
Glund, S., Deshmukh, Atul Shahaji, Long, Y. C., Moller, T., Koistinen, H. A., Caidahl, K., Zierath, Juleen R & Krook, A., Jun 2007, In: Diabetes. 56, 6, p. 1630-7 8 p.Research output: Contribution to journal › Journal article › Research › peer-review
- 2006
Exercise-induced phosphorylation of the novel Akt substrates AS160 and filamin A in human skeletal muscle
Deshmukh, Atul Shahaji, Coffey, V. G., Zhong, Z., Chibalin, A. V., Hawley, J. A. & Zierath, Juleen R, Jun 2006, In: Diabetes. 55, 6, p. 1776-82 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
AMPK-mediated AS160 phosphorylation in skeletal muscle is dependent on AMPK catalytic and regulatory subunits.
Treebak, Jonas Thue, Glund, S., Deshmukh, Atul Shahaji, Klein, D. K., Long, Y. C., Jensen, Thomas Elbenhardt, Jørgensen, S. B., Viollet, B., Andersson, L., Neumann, D., Wallimann, T., Richter, Erik A., Chibalin, A. V., Zierath, J. R. & Wojtaszewski, Jørgen F P, 2006, In: Diabetes. 55, 7, p. 2051-8 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 119731582
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Protein aggregation capture on microparticles enables multi-purpose proteomics sample preparation
Research output: Contribution to journal › Journal article › Research › peer-review
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194
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Progressive resistance training in head and neck cancer patients undergoing concomitant chemoradiotherapy
Research output: Contribution to journal › Journal article › Research › peer-review
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192
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A Multi-Omics Approach to Liver Diseases: Integration of Single Nuclei Transcriptomics with Proteomics and HiCap Bulk Data in Human Liver
Research output: Contribution to journal › Journal article › Research › peer-review
Published