Mani Arumugam
- Published
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
Karcher, N., Nigro, E., Puncochar, M., Blanco-Miguez, A., Ciciani, M., Manghi, P., Zolfo, M., Cumbo, F., Manara, S., Golzato, D., Cereseto, A., Arumugam, Mani, Bui, T. P. N., Tytgat, H. L. P., Valles-Colomer, M., de Vos, W. M. & Segata, N., 2021, In: Genome Biology. 22, 24 p., 209.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Impaired glucose metabolism and altered gut microbiome despite calorie restriction of ob/ob mice
Kashani, A., Brejnrod, A. D., Jin, C., Kern, T., Madsen, A. N., Holm, L. A., Gerber, G. K., Holm, Jens-Christian, Hansen, Torben, Holst, Birgitte & Arumugam, Mani, 2019, In: Animal Microbiome. 1, 1, 16 p., 11.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The Treeterbi and Parallel Treeterbi algorithms: efficient, optimal decoding for ordinary, generalized and pair HMMs.
Keibler, E., Arumugam, Mani & Brent, M. R., Mar 2007, In: Bioinformatics. 23, 5, p. 545-554 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
MOCAT: a metagenomics assembly and gene prediction toolkit
Kultima, J. R., Sunagawa, S., Li, J., Chen, W., Chen, H., Mende, D. R., Arumugam, Mani, Pan, Q., Liu, B., Qin, J., Wang, J. & Bork, P., 2012, In: PLOS ONE. 7, 10, p. e47656Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Richness of human gut microbiome correlates with metabolic markers
Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J-M., Kennedy, S., Leonard, P., Li, J., Burgdorf, K. S., Grarup, N., Jørgensen, T., Brandslund, I., Nielsen, H. B., Juncker, A., dos Santos, M. B. Q., Levenez, F. & 62 others, , 2013, In: Nature. 500, 7464, p. 541-546 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An integrated catalog of reference genes in the human gut microbiome
Li, J., Jia, H., Cai, X., Zhong, H., Feng, Q., Sunagawa, S., Arumugam, M., Kultima, J. R., Prifti, E., Nielsen, T., Juncker, A., Manichanh, C., Chen, B., Zhang, W., Levenez, F., Wang, J., Xu, X., Xiao, L., Liang, S., Zhang, D. & 17 others, , 2014, In: Nature Biotechnology. 32, 8, p. 834-845 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Metagenomic evidence for co-occurrence of antibiotic, biocide and metal resistance genes in pigs
Li, Xuan Ji, Rensing, C., Vestergaard, G., Arumugam, Mani, Nesme, Joseph, Gupta, S., Brejnrod, A. D. & Sørensen, Søren Johannes, 2022, In: Environment International. 158, 10 p., 106899.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner.
Lu, D. V., Brown, R. H., Arumugam, Mani & Brent, M. R., Jul 2009, In: Bioinformatics. 25, 13, p. 1587-1593 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The role of the bacterial microbiota in alcoholic and non-alcoholic fatty liver disease
Madsen, Anne Lundager, Brach, Thorsten, Kern, T., Bak, Emilie Glad, Nielsen, T. & Arumugam, Mani, 9 Nov 2018, The Human Gut-Liver-Axis in Health and Disease. Springer, p. 89-104 16 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Education
- Published
Antifibrotic and molecular aspects of rifaximin in alcoholic liver disease: study protocol for a randomized controlled trial
Madsen, B. S., Trebicka, J., Thiele, M., Israelsen, M., Arumugam, Mani, Havelund, T. & Krag, A., 2018, In: Trials. 19, p. 1-5 5 p., 143.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 41056735
Most downloads
-
1245
downloads
A human gut microbial gene catalogue established by metagenomic sequencing
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
639
downloads
Circulating microbiome in blood of different circulatory compartments
Research output: Contribution to journal › Letter › Research › peer-review
Published -
447
downloads
An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples
Research output: Contribution to journal › Journal article › Research › peer-review
Published