Mani Arumugam
- Published
Compartmentalization of Immune Response and Microbial Translocation in Decompensated Cirrhosis
Alvarez Silva, Maria Camila, Schierwagen, R., Pohlmann, A., Magdaleno, F., Uschner, F. E., Ryan, P., Vehreschild, M. J. G. T., Claria, J., Latz, E., Lelouvier, B., Arumugam, Mani & Trebicka, J., 2019, In: Frontiers in Immunology. 10, 11 p., 69.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Trans-ethnic gut microbiota signatures of type 2 diabetes in Denmark and India
Alvarez-Silva, C., Kashani, A., Hansen, T. H., Pinna, N. K., Anjana, R. M., Dutta, A., Saxena, S., Støy, J., Kampmann, U., Nielsen, T., Jørgensen, T., Gnanaprakash, V., Gnanavadivel, R., Sukumaran, A., Rani, C. S. S., Færch, K., Radha, V., Balasubramanyam, M., Nair, G. B., Das, B. & 6 others, , 2021, In: Genome Medicine. 13, 37.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The role of the mycobiota in the gut-liver axis
Alvarez Silva, Maria Camila, Brach, Thorsten, Brejnrod, A. D. & Arumugam, Mani, 9 Nov 2018, The Human Gut-Liver-Axis in Health and Disease. Springer, p. 133-145 13 p.Research output: Chapter in Book/Report/Conference proceeding › Book chapter › Education
- Published
Insight into structure and assembly of the nuclear pore complex by utilizing the genome of a eukaryotic thermophile
Amlacher, S., Sarges, P., Flemming, D., van Noort, V., Kunze, R., Devos, D. P., Arumugam, Mani, Bork, P. & Hurt, E., 2011, In: Cell. 146, 2, p. 277-89 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
SmashCommunity: A metagenomic annotation and analysis tool.
Arumugam, Mani, Harrington, E. D., Foerstner, K. U., Raes, J. & Bork, P., Oct 2010, In: Bioinformatics. 26, 23, p. 2977-2978 2 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Pairagon+N-SCAN_EST: a model-based gene annotation pipeline
Arumugam, Mani, Wei, C., Brown, R. H. & Brent, M. R., 2006, In: Genome Biology (Online Edition). 7 Suppl 1, p. S5.1-10Research output: Contribution to journal › Journal article › Research › peer-review
- Published
EMPRR: A high-dimensional EM-based piecewise regression algorithm
Arumugam, Mani & Scott, S. D., 2004, Proceedings of the 2004 International Conference on Machine Learning and Applications, ICMLA '04. Kantardzic, M., Nasraoui, O. & Milanova, M. (eds.). p. 264-271 8 p. (Proceedings of the 2004 International Conference on Machine Learning and Applications, ICMLA '04).Research output: Chapter in Book/Report/Conference proceeding › Article in proceedings › Research › peer-review
- Published
Enterotypes of the human gut microbiome: [Plus]Corrigendum [Plus]Addendum
Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, T., Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., Batto, J-M., dos Santos, M. B. Q., Borruel, N., Casellas, F., Fernandez, L., Gautier, L., Hansen, T., Hattori, M., Hayashi, T., Kleerebezem, M., Kurokawa, K. & 31 others, , 2011, In: Nature. 473, 7346, p. 174-180 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples
Bag, S., Saha, B., Mehta, O., Anbumani, D., Kumar, N., Dayal, M., Pant, A., Kumar, P., Saxena, S., Allin, K. H., Hansen, T., Arumugam, M., Vestergaard, H., Pedersen, O., Pereira, V., Abraham, P., Tripathi, R., Wadhwa, N., Bhatnagar, S., Prakash, V. G. & 7 others, , 2016, In: Scientific Reports. 6, 9 p., 26775.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodriguez, A. M., Chase, J., Cope, E. K. & 92 others, , 2019, In: Nature Biotechnology. 37, 8, p. 852-857Research output: Contribution to journal › Letter › Research › peer-review
- Published
Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (Nature Biotechnology, (2019), 37, 8, (852-857), 10.1038/s41587-019-0209-9)
Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J., Cope, E. K. & 92 others, , 1 Sep 2019, In: Nature Biotechnology. 37, 9, p. 1091 1 p.Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Genetic analysis of blood molecular phenotypes reveals common properties in the regulatory networks affecting complex traits
Brown, A. A., Fernandez-Tajes, J. J., Hong, M. G., Brorsson, C. A., Koivula, R. W., Davtian, D., Dupuis, T., Sartori, A., Michalettou, T. D., Forgie, I. M., Adam, J., Allin, K. H., Caiazzo, R., Cederberg, H., De Masi, F., Elders, P. J. M., Giordano, G. N., Haid, M., Hansen, T., Hansen, T. H. & 134 others, , 2023, In: Nature Communications. 14, 17 p., 5062.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Enterotypes in the landscape of gut microbial community composition
Costea, P. I., Hildebrand, F., Manimozhiyan, A., Bäckhed, F., Blaser, M. J., Bushman, F. D., De Vos, W. M., Ehrlich, S. D., Fraser, C. M., Hattori, M., Huttenhower, C., Jeffery, I. B., Knights, D., Lewis, J. D., Ley, R. E., Ochman, H., O'Toole, P. W., Quince, C., Relman, D. A., Shanahan, F. & 9 others, , 2018, In: Nature Microbiology. 3, 1, p. 8-16 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
The effect of gluten in adolescents and young adults with gastrointestinal symptoms: A blinded randomised cross-over trial
Crawley, C., Savino, N., Halby, C., Sander, S. D., Nybo Andersen, Anne-Marie, Arumugam, Mani, Murray, J., Christensen, R. & Husby, S., 2022, In: Alimentary Pharmacology and Therapeutics, Supplement. 55, 9, p. 1116-1127 12 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interplay between FGF21 and insulin action in the liver regulates metabolism
Emanuelli, Brice, Vienberg, S. G., Smyth, G., Cheng, C., Stanford, K. I., Arumugam, Mani, Michael, M. D., Adams, A. C., Kharitonenkov, A. & Kahn, C. R., 3 Feb 2014, In: The Journal of Clinical Investigation. 124, 2, p. 515-27 13 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Interplay between FGF21 and insulin action in the liver regulates metabolism
Emanuelli, Brice, Vienberg, S. G., Smyth, G., Cheng, C., Stanford, K. I., Arumugam, Mani, Michael, M. D., Adams, A. C., Kharitonenkov, A. & Kahn, C. R., Jan 2015, In: The Journal of Clinical Investigation. 125, 1, p. 458Research output: Contribution to journal › Comment/debate › Research › peer-review
- Published
Gut microbiome development along the colorectal adenoma-carcinoma sequence
Feng, Q., Liang, S., Jia, H., Stadlmayr, A., Tang, L., Lan, Z., Zhang, D., Xia, H., Xu, X., Jie, Z., Su, L., Li, X., Li, X., Li, J., Xiao, L., Huber-Schönauer, U., Niederseer, D., Xu, X., Al-Aama, J. Y., Yang, H. & 6 others, , 2015, In: Nature Communications. 6, 13 p., 6528.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Corrigendum: Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
Forslund, K., Hildebrand, F., Nielsen, T., Falony, G., Le Chatelier, E., Sunagawa, S., Prifti, E., Vieira-Silva, S., Gudmundsdottir, V., Pedersen, H. K., Arumugam, M., Kristiansen, K., Voigt, A. Y., Vestergaard, H., Hercog, R., Costea, P. I., Kultima, J. R., Li, J., Jørgensen, T., Levenez, F. & 10 others, , 3 May 2017, In: Nature. 545, 116, 1 p., 22318.Research output: Contribution to journal › Comment/debate › Research
- Published
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
Forslund, K., Hildebrand, F., Nielsen, T., Falony, G., Le Chatelier, E., Sunagawa, S., Prifti, E., Vieira-Silva, S., Gudmundsdottir, V., Pedersen, H. K., Arumugam, M., Kristiansen, K., Yvonne Voigt, A., Vestergaard, H., Hercog, R., Igor Costea, P., Roat Kultima, J., Li, J., Jørgensen, T., Levenez, F. & 9 others, , 2015, In: Nature. 528, 7581, p. 262-266 5 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Country-specific antibiotic use practices impact the human gut resistome
Forslund, K., Sunagawa, S., Kultima, J. R., Mende, D. R., Arumugam, Mani, Typas, A. & Bork, P., Jul 2013, In: Genome Research. 23, 7, p. 1163-9 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Molecular properties of adult mouse gastric and intestinal epithelial progenitors in their niches
Giannakis, M., Stappenbeck, T. S., Mills, J. C., Leip, D. G., Lovett, M., Clifton, S. W., Ippolito, J. E., Glasscock, J. I., Arumugam, Mani, Brent, M. R. & Gordon, J. I., 2006, In: Journal of Biological Chemistry. 281, 16, p. 11292-300 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
Gibbs, R. A., Weinstock, G. M., Metzker, M. L., Muzny, D. M., Sodergren, E. J., Scherer, S., Scott, G., Steffen, D., Worley, K. C., Burch, P. E., Okwuonu, G., Hines, S., Lewis, L., DeRamo, C., Delgado, O., Dugan-Rocha, S., Miner, G., Morgan, M., Hawes, A., Gill, R. & 31 others, , 2004, In: Nature. 428, 6982, p. 493-521 29 p.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions
Gnanasekaran, Thiyagarajan, Sarathi, Arjun, Fang, Q., Azarm, A., Geraldo, Juliana Assis, Nigro, E. & Arumugam, Mani, 2023, In: mSystems. 8, 4, 16 p., e0124922.Research output: Contribution to journal › Journal article › Research › peer-review
- Published
Identification of Novel Bioactive Metabolites Produced During the Cocultivation of Probiotic Strains and Clostridium Difficile in In Vitro Setup
Gnanasekaran, Thiyagarajan, Saenz, C., Moritz, Thomas & Arumugam, Mani, 2020, In: Journal of Clinical Gastroenterology. 54, Suppl. 1, p. S12 1 p.Research output: Contribution to journal › Conference abstract in journal › Research
- Published
Ecological adaptation and succession of human fecal microbial communities in an automated in vitro fermentation system
Gnanasekaran, Thiyagarajan, Geraldo, Juliana Assis, Ahrenkiel, D. W., Alvarez Silva, Maria Camila, Saenz, C., Khan, Adnan, Hanteer, O., Gunalan, V., Trost, K., Moritz, Thomas & Arumugam, Mani, 2021, In: mSystems. 6, 4, 18 p., e00232-21.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 41056735
Most downloads
-
1245
downloads
A human gut microbial gene catalogue established by metagenomic sequencing
Research output: Contribution to journal › Journal article › Research › peer-review
Published -
639
downloads
Circulating microbiome in blood of different circulatory compartments
Research output: Contribution to journal › Letter › Research › peer-review
Published -
447
downloads
An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples
Research output: Contribution to journal › Journal article › Research › peer-review
Published