Standard
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. / Yilmaz, Pelin; Kottmann, Renzo; Field, Dawn; Knight, Rob; Cole, James R; Amaral-Zettler, Linda; Gilbert, Jack A; Karsch-Mizrachi, Ilene; Johnston, Anjanette; Cochrane, Guy; Vaughan, Robert; Hunter, Christopher; Park, Joonhong; Morrison, Norman; Rocca-Serra, Philippe; Sterk, Peter; Arumugam, Manimozhiyan; Bailey, Mark; Baumgartner, Laura; Birren, Bruce W; Blaser, Martin J; Bonazzi, Vivien; Booth, Tim; Bork, Peer; Bushman, Frederic D; Buttigieg, Pier Luigi; Chain, Patrick S G; Charlson, Emily; Costello, Elizabeth K; Huot-Creasy, Heather; Dawyndt, Peter; DeSantis, Todd; Fierer, Noah; Fuhrman, Jed A; Gallery, Rachel E; Gevers, Dirk; Gibbs, Richard A; San Gil, Inigo; Gonzalez, Antonio; Gordon, Jeffrey I; Guralnick, Robert; Hankeln, Wolfgang; Highlander, Sarah; Hugenholtz, Philip; Jansson, Janet; Kau, Andrew L; Kelley, Scott T; Kennedy, Jerry; Knights, Dan; Koren, Omry; Kuczynski, Justin; Kyrpides, Nikos; Larsen, Robert; Lauber, Christian L; Legg, Teresa; Ley, Ruth E; Lozupone, Catherine A; Ludwig, Wolfgang; Lyons, Donna; Maguire, Eamonn; Methé, Barbara A; Meyer, Folker; Muegge, Brian; Nakielny, Sara; Nelson, Karen E; Nemergut, Diana; Neufeld, Josh D; Newbold, Lindsay K; Oliver, Anna E; Pace, Norman R; Palanisamy, Giriprakash; Peplies, Jörg; Petrosino, Joseph; Proctor, Lita; Pruesse, Elmar; Quast, Christian; Raes, Jeroen; Ratnasingham, Sujeevan; Ravel, Jacques; Relman, David A; Assunta-Sansone, Susanna; Schloss, Patrick D; Schriml, Lynn; Sinha, Rohini; Smith, Michelle I; Sodergren, Erica; Spo, Aymé; Stombaugh, Jesse; Tiedje, James M; Ward, Doyle V; Weinstock, George M; Wendel, Doug; White, Owen; Whiteley, Andrew; Wilke, Andreas; Wortman, Jennifer R; Yatsunenko, Tanya; Glöckner, Frank Oliver.
In:
Nature Biotechnology, Vol. 29, No. 5, 2011, p. 415-20.
Research output: Contribution to journal › Journal article › Research › peer-review
Harvard
Yilmaz, P, Kottmann, R, Field, D, Knight, R, Cole, JR, Amaral-Zettler, L, Gilbert, JA, Karsch-Mizrachi, I, Johnston, A, Cochrane, G, Vaughan, R, Hunter, C, Park, J, Morrison, N, Rocca-Serra, P, Sterk, P
, Arumugam, M, Bailey, M, Baumgartner, L, Birren, BW, Blaser, MJ, Bonazzi, V, Booth, T, Bork, P, Bushman, FD, Buttigieg, PL, Chain, PSG, Charlson, E, Costello, EK, Huot-Creasy, H, Dawyndt, P, DeSantis, T, Fierer, N, Fuhrman, JA, Gallery, RE, Gevers, D, Gibbs, RA, San Gil, I, Gonzalez, A, Gordon, JI, Guralnick, R, Hankeln, W, Highlander, S, Hugenholtz, P, Jansson, J, Kau, AL, Kelley, ST, Kennedy, J, Knights, D, Koren, O, Kuczynski, J, Kyrpides, N, Larsen, R, Lauber, CL, Legg, T, Ley, RE, Lozupone, CA, Ludwig, W, Lyons, D, Maguire, E, Methé, BA, Meyer, F, Muegge, B, Nakielny, S, Nelson, KE, Nemergut, D, Neufeld, JD, Newbold, LK, Oliver, AE, Pace, NR, Palanisamy, G, Peplies, J, Petrosino, J, Proctor, L, Pruesse, E, Quast, C, Raes, J, Ratnasingham, S, Ravel, J, Relman, DA, Assunta-Sansone, S, Schloss, PD, Schriml, L, Sinha, R, Smith, MI, Sodergren, E, Spo, A, Stombaugh, J, Tiedje, JM, Ward, DV, Weinstock, GM, Wendel, D, White, O, Whiteley, A, Wilke, A, Wortman, JR, Yatsunenko, T & Glöckner, FO 2011, '
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications',
Nature Biotechnology, vol. 29, no. 5, pp. 415-20.
https://doi.org/10.1038/nbt.1823APA
Yilmaz, P., Kottmann, R., Field, D., Knight, R., Cole, J. R., Amaral-Zettler, L., Gilbert, J. A., Karsch-Mizrachi, I., Johnston, A., Cochrane, G., Vaughan, R., Hunter, C., Park, J., Morrison, N., Rocca-Serra, P., Sterk, P.
, Arumugam, M., Bailey, M., Baumgartner, L., ... Glöckner, F. O. (2011).
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
Nature Biotechnology,
29(5), 415-20.
https://doi.org/10.1038/nbt.1823Vancouver
Yilmaz P, Kottmann R, Field D, Knight R, Cole JR, Amaral-Zettler L et al.
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications.
Nature Biotechnology. 2011;29(5):415-20.
https://doi.org/10.1038/nbt.1823Author
Yilmaz, Pelin ; Kottmann, Renzo ; Field, Dawn ; Knight, Rob ; Cole, James R ; Amaral-Zettler, Linda ; Gilbert, Jack A ; Karsch-Mizrachi, Ilene ; Johnston, Anjanette ; Cochrane, Guy ; Vaughan, Robert ; Hunter, Christopher ; Park, Joonhong ; Morrison, Norman ; Rocca-Serra, Philippe ; Sterk, Peter ; Arumugam, Manimozhiyan ; Bailey, Mark ; Baumgartner, Laura ; Birren, Bruce W ; Blaser, Martin J ; Bonazzi, Vivien ; Booth, Tim ; Bork, Peer ; Bushman, Frederic D ; Buttigieg, Pier Luigi ; Chain, Patrick S G ; Charlson, Emily ; Costello, Elizabeth K ; Huot-Creasy, Heather ; Dawyndt, Peter ; DeSantis, Todd ; Fierer, Noah ; Fuhrman, Jed A ; Gallery, Rachel E ; Gevers, Dirk ; Gibbs, Richard A ; San Gil, Inigo ; Gonzalez, Antonio ; Gordon, Jeffrey I ; Guralnick, Robert ; Hankeln, Wolfgang ; Highlander, Sarah ; Hugenholtz, Philip ; Jansson, Janet ; Kau, Andrew L ; Kelley, Scott T ; Kennedy, Jerry ; Knights, Dan ; Koren, Omry ; Kuczynski, Justin ; Kyrpides, Nikos ; Larsen, Robert ; Lauber, Christian L ; Legg, Teresa ; Ley, Ruth E ; Lozupone, Catherine A ; Ludwig, Wolfgang ; Lyons, Donna ; Maguire, Eamonn ; Methé, Barbara A ; Meyer, Folker ; Muegge, Brian ; Nakielny, Sara ; Nelson, Karen E ; Nemergut, Diana ; Neufeld, Josh D ; Newbold, Lindsay K ; Oliver, Anna E ; Pace, Norman R ; Palanisamy, Giriprakash ; Peplies, Jörg ; Petrosino, Joseph ; Proctor, Lita ; Pruesse, Elmar ; Quast, Christian ; Raes, Jeroen ; Ratnasingham, Sujeevan ; Ravel, Jacques ; Relman, David A ; Assunta-Sansone, Susanna ; Schloss, Patrick D ; Schriml, Lynn ; Sinha, Rohini ; Smith, Michelle I ; Sodergren, Erica ; Spo, Aymé ; Stombaugh, Jesse ; Tiedje, James M ; Ward, Doyle V ; Weinstock, George M ; Wendel, Doug ; White, Owen ; Whiteley, Andrew ; Wilke, Andreas ; Wortman, Jennifer R ; Yatsunenko, Tanya ; Glöckner, Frank Oliver. / Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications. In: Nature Biotechnology. 2011 ; Vol. 29, No. 5. pp. 415-20.
Bibtex
@article{e1fff34c77d54515ae53fca20121ceb3,
title = "Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications",
abstract = "Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences--the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The 'environmental packages' apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we present the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.",
keywords = "Biological Markers, Checklist, Databases, Genetic, Environment, Genes, rRNA, Genetic Variation, Humans, Information Storage and Retrieval, Internet, Metagenomics, Programming Languages, Sequence Analysis, DNA, Software",
author = "Pelin Yilmaz and Renzo Kottmann and Dawn Field and Rob Knight and Cole, {James R} and Linda Amaral-Zettler and Gilbert, {Jack A} and Ilene Karsch-Mizrachi and Anjanette Johnston and Guy Cochrane and Robert Vaughan and Christopher Hunter and Joonhong Park and Norman Morrison and Philippe Rocca-Serra and Peter Sterk and Manimozhiyan Arumugam and Mark Bailey and Laura Baumgartner and Birren, {Bruce W} and Blaser, {Martin J} and Vivien Bonazzi and Tim Booth and Peer Bork and Bushman, {Frederic D} and Buttigieg, {Pier Luigi} and Chain, {Patrick S G} and Emily Charlson and Costello, {Elizabeth K} and Heather Huot-Creasy and Peter Dawyndt and Todd DeSantis and Noah Fierer and Fuhrman, {Jed A} and Gallery, {Rachel E} and Dirk Gevers and Gibbs, {Richard A} and {San Gil}, Inigo and Antonio Gonzalez and Gordon, {Jeffrey I} and Robert Guralnick and Wolfgang Hankeln and Sarah Highlander and Philip Hugenholtz and Janet Jansson and Kau, {Andrew L} and Kelley, {Scott T} and Jerry Kennedy and Dan Knights and Omry Koren and Justin Kuczynski and Nikos Kyrpides and Robert Larsen and Lauber, {Christian L} and Teresa Legg and Ley, {Ruth E} and Lozupone, {Catherine A} and Wolfgang Ludwig and Donna Lyons and Eamonn Maguire and Meth{\'e}, {Barbara A} and Folker Meyer and Brian Muegge and Sara Nakielny and Nelson, {Karen E} and Diana Nemergut and Neufeld, {Josh D} and Newbold, {Lindsay K} and Oliver, {Anna E} and Pace, {Norman R} and Giriprakash Palanisamy and J{\"o}rg Peplies and Joseph Petrosino and Lita Proctor and Elmar Pruesse and Christian Quast and Jeroen Raes and Sujeevan Ratnasingham and Jacques Ravel and Relman, {David A} and Susanna Assunta-Sansone and Schloss, {Patrick D} and Lynn Schriml and Rohini Sinha and Smith, {Michelle I} and Erica Sodergren and Aym{\'e} Spo and Jesse Stombaugh and Tiedje, {James M} and Ward, {Doyle V} and Weinstock, {George M} and Doug Wendel and Owen White and Andrew Whiteley and Andreas Wilke and Wortman, {Jennifer R} and Tanya Yatsunenko and Gl{\"o}ckner, {Frank Oliver}",
year = "2011",
doi = "10.1038/nbt.1823",
language = "English",
volume = "29",
pages = "415--20",
journal = "Nature Biotechnology",
issn = "1087-0156",
publisher = "nature publishing group",
number = "5",
}
RIS
TY - JOUR
T1 - Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications
AU - Yilmaz, Pelin
AU - Kottmann, Renzo
AU - Field, Dawn
AU - Knight, Rob
AU - Cole, James R
AU - Amaral-Zettler, Linda
AU - Gilbert, Jack A
AU - Karsch-Mizrachi, Ilene
AU - Johnston, Anjanette
AU - Cochrane, Guy
AU - Vaughan, Robert
AU - Hunter, Christopher
AU - Park, Joonhong
AU - Morrison, Norman
AU - Rocca-Serra, Philippe
AU - Sterk, Peter
AU - Arumugam, Manimozhiyan
AU - Bailey, Mark
AU - Baumgartner, Laura
AU - Birren, Bruce W
AU - Blaser, Martin J
AU - Bonazzi, Vivien
AU - Booth, Tim
AU - Bork, Peer
AU - Bushman, Frederic D
AU - Buttigieg, Pier Luigi
AU - Chain, Patrick S G
AU - Charlson, Emily
AU - Costello, Elizabeth K
AU - Huot-Creasy, Heather
AU - Dawyndt, Peter
AU - DeSantis, Todd
AU - Fierer, Noah
AU - Fuhrman, Jed A
AU - Gallery, Rachel E
AU - Gevers, Dirk
AU - Gibbs, Richard A
AU - San Gil, Inigo
AU - Gonzalez, Antonio
AU - Gordon, Jeffrey I
AU - Guralnick, Robert
AU - Hankeln, Wolfgang
AU - Highlander, Sarah
AU - Hugenholtz, Philip
AU - Jansson, Janet
AU - Kau, Andrew L
AU - Kelley, Scott T
AU - Kennedy, Jerry
AU - Knights, Dan
AU - Koren, Omry
AU - Kuczynski, Justin
AU - Kyrpides, Nikos
AU - Larsen, Robert
AU - Lauber, Christian L
AU - Legg, Teresa
AU - Ley, Ruth E
AU - Lozupone, Catherine A
AU - Ludwig, Wolfgang
AU - Lyons, Donna
AU - Maguire, Eamonn
AU - Methé, Barbara A
AU - Meyer, Folker
AU - Muegge, Brian
AU - Nakielny, Sara
AU - Nelson, Karen E
AU - Nemergut, Diana
AU - Neufeld, Josh D
AU - Newbold, Lindsay K
AU - Oliver, Anna E
AU - Pace, Norman R
AU - Palanisamy, Giriprakash
AU - Peplies, Jörg
AU - Petrosino, Joseph
AU - Proctor, Lita
AU - Pruesse, Elmar
AU - Quast, Christian
AU - Raes, Jeroen
AU - Ratnasingham, Sujeevan
AU - Ravel, Jacques
AU - Relman, David A
AU - Assunta-Sansone, Susanna
AU - Schloss, Patrick D
AU - Schriml, Lynn
AU - Sinha, Rohini
AU - Smith, Michelle I
AU - Sodergren, Erica
AU - Spo, Aymé
AU - Stombaugh, Jesse
AU - Tiedje, James M
AU - Ward, Doyle V
AU - Weinstock, George M
AU - Wendel, Doug
AU - White, Owen
AU - Whiteley, Andrew
AU - Wilke, Andreas
AU - Wortman, Jennifer R
AU - Yatsunenko, Tanya
AU - Glöckner, Frank Oliver
PY - 2011
Y1 - 2011
N2 - Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences--the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The 'environmental packages' apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we present the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.
AB - Here we present a standard developed by the Genomic Standards Consortium (GSC) for reporting marker gene sequences--the minimum information about a marker gene sequence (MIMARKS). We also introduce a system for describing the environment from which a biological sample originates. The 'environmental packages' apply to any genome sequence of known origin and can be used in combination with MIMARKS and other GSC checklists. Finally, to establish a unified standard for describing sequence data and to provide a single point of entry for the scientific community to access and learn about GSC checklists, we present the minimum information about any (x) sequence (MIxS). Adoption of MIxS will enhance our ability to analyze natural genetic diversity documented by massive DNA sequencing efforts from myriad ecosystems in our ever-changing biosphere.
KW - Biological Markers
KW - Checklist
KW - Databases, Genetic
KW - Environment
KW - Genes, rRNA
KW - Genetic Variation
KW - Humans
KW - Information Storage and Retrieval
KW - Internet
KW - Metagenomics
KW - Programming Languages
KW - Sequence Analysis, DNA
KW - Software
U2 - 10.1038/nbt.1823
DO - 10.1038/nbt.1823
M3 - Journal article
C2 - 21552244
VL - 29
SP - 415
EP - 420
JO - Nature Biotechnology
JF - Nature Biotechnology
SN - 1087-0156
IS - 5
ER -
