Reporting guidelines for human microbiome research: the STORMS checklist

Research output: Contribution to journal › Review › Research › peer-review

Standard

Reporting guidelines for human microbiome research : the STORMS checklist. / Mirzayi, Chloe; Renson, Audrey; Furlanello, Cesare; Sansone, Susanna Assunta; Zohra, Fatima; Elsafoury, Shaimaa; Geistlinger, Ludwig; Kasselman, Lora J.; Eckenrode, Kelly; van de Wijgert, Janneke; Loughman, Amy; Marques, Francine Z.; MacIntyre, David A.; Arumugam, Manimozhiyan; Azhar, Rimsha; Beghini, Francesco; Bergstrom, Kirk; Bhatt, Ami; Bisanz, Jordan E.; Braun, Jonathan; Bravo, Hector Corrada; Buck, Gregory A.; Bushman, Frederic; Casero, David; Clarke, Gerard; Collado, Maria Carmen; Cotter, Paul D.; Cryan, John F.; Demmer, Ryan T.; Devkota, Suzanne; Elinav, Eran; Escobar, Juan S.; Fettweis, Jennifer; Finn, Robert D.; Fodor, Anthony A.; Forslund, Sofia; Franke, Andre; Furlanello, Cesare; Gilbert, Jack; Grice, Elizabeth; Haibe-Kains, Benjamin; Handley, Scott; Herd, Pamela; Holmes, Susan; Jacobs, Jonathan P.; Karstens, Lisa; Knight, Rob; Knights, Dan; Koren, Omry; Kwon, Douglas S.; Genomic Standards Consortium; Massive Analysis and Quality Control Society.

In: Nature Medicine, Vol. 27, No. 11, 2021, p. 1885-1892.

Research output: Contribution to journal › Review › Research › peer-review

Harvard

Mirzayi, C, Renson, A, Furlanello, C, Sansone, SA, Zohra, F, Elsafoury, S, Geistlinger, L, Kasselman, LJ, Eckenrode, K, van de Wijgert, J, Loughman, A, Marques, FZ, MacIntyre, DA, Arumugam, M, Azhar, R, Beghini, F, Bergstrom, K, Bhatt, A, Bisanz, JE, Braun, J, Bravo, HC, Buck, GA, Bushman, F, Casero, D, Clarke, G, Collado, MC, Cotter, PD, Cryan, JF, Demmer, RT, Devkota, S, Elinav, E, Escobar, JS, Fettweis, J, Finn, RD, Fodor, AA, Forslund, S, Franke, A, Furlanello, C, Gilbert, J, Grice, E, Haibe-Kains, B, Handley, S, Herd, P, Holmes, S, Jacobs, JP, Karstens, L, Knight, R, Knights, D, Koren, O, Kwon, DS, Genomic Standards Consortium & Massive Analysis and Quality Control Society 2021, 'Reporting guidelines for human microbiome research: the STORMS checklist', Nature Medicine, vol. 27, no. 11, pp. 1885-1892. https://doi.org/10.1038/s41591-021-01552-x

APA

Mirzayi, C., Renson, A., Furlanello, C., Sansone, S. A., Zohra, F., Elsafoury, S., Geistlinger, L., Kasselman, L. J., Eckenrode, K., van de Wijgert, J., Loughman, A., Marques, F. Z., MacIntyre, D. A., Arumugam, M., Azhar, R., Beghini, F., Bergstrom, K., Bhatt, A., Bisanz, J. E., ... Massive Analysis and Quality Control Society (2021). Reporting guidelines for human microbiome research: the STORMS checklist. Nature Medicine, 27(11), 1885-1892. https://doi.org/10.1038/s41591-021-01552-x

Vancouver

Mirzayi C, Renson A, Furlanello C, Sansone SA, Zohra F, Elsafoury S et al. Reporting guidelines for human microbiome research: the STORMS checklist. Nature Medicine. 2021;27(11):1885-1892. https://doi.org/10.1038/s41591-021-01552-x

Author

Mirzayi, Chloe ; Renson, Audrey ; Furlanello, Cesare ; Sansone, Susanna Assunta ; Zohra, Fatima ; Elsafoury, Shaimaa ; Geistlinger, Ludwig ; Kasselman, Lora J. ; Eckenrode, Kelly ; van de Wijgert, Janneke ; Loughman, Amy ; Marques, Francine Z. ; MacIntyre, David A. ; Arumugam, Manimozhiyan ; Azhar, Rimsha ; Beghini, Francesco ; Bergstrom, Kirk ; Bhatt, Ami ; Bisanz, Jordan E. ; Braun, Jonathan ; Bravo, Hector Corrada ; Buck, Gregory A. ; Bushman, Frederic ; Casero, David ; Clarke, Gerard ; Collado, Maria Carmen ; Cotter, Paul D. ; Cryan, John F. ; Demmer, Ryan T. ; Devkota, Suzanne ; Elinav, Eran ; Escobar, Juan S. ; Fettweis, Jennifer ; Finn, Robert D. ; Fodor, Anthony A. ; Forslund, Sofia ; Franke, Andre ; Furlanello, Cesare ; Gilbert, Jack ; Grice, Elizabeth ; Haibe-Kains, Benjamin ; Handley, Scott ; Herd, Pamela ; Holmes, Susan ; Jacobs, Jonathan P. ; Karstens, Lisa ; Knight, Rob ; Knights, Dan ; Koren, Omry ; Kwon, Douglas S. ; Genomic Standards Consortium ; Massive Analysis and Quality Control Society. / Reporting guidelines for human microbiome research : the STORMS checklist. In: Nature Medicine. 2021 ; Vol. 27, No. 11. pp. 1885-1892.

Bibtex

@article{6ef3b468154643179f7e2959020f62bd,
title = "Reporting guidelines for human microbiome research: the STORMS checklist",
abstract = "The particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studies lack key features specific to microbiome studies. Therefore, a multidisciplinary group of microbiome epidemiology researchers adapted guidelines for observational and genetic studies to culture-independent human microbiome studies, and also developed new reporting elements for laboratory, bioinformatics and statistical analyses tailored to microbiome studies. The resulting tool, called {\textquoteleft}Strengthening The Organization and Reporting of Microbiome Studies{\textquoteright} (STORMS), is composed of a 17-item checklist organized into six sections that correspond to the typical sections of a scientific publication, presented as an editable table for inclusion in supplementary materials. The STORMS checklist provides guidance for concise and complete reporting of microbiome studies that will facilitate manuscript preparation, peer review, and reader comprehension of publications and comparative analysis of published results.",
author = "Chloe Mirzayi and Audrey Renson and Cesare Furlanello and Sansone, {Susanna Assunta} and Fatima Zohra and Shaimaa Elsafoury and Ludwig Geistlinger and Kasselman, {Lora J.} and Kelly Eckenrode and {van de Wijgert}, Janneke and Amy Loughman and Marques, {Francine Z.} and MacIntyre, {David A.} and Manimozhiyan Arumugam and Rimsha Azhar and Francesco Beghini and Kirk Bergstrom and Ami Bhatt and Bisanz, {Jordan E.} and Jonathan Braun and Bravo, {Hector Corrada} and Buck, {Gregory A.} and Frederic Bushman and David Casero and Gerard Clarke and Collado, {Maria Carmen} and Cotter, {Paul D.} and Cryan, {John F.} and Demmer, {Ryan T.} and Suzanne Devkota and Eran Elinav and Escobar, {Juan S.} and Jennifer Fettweis and Finn, {Robert D.} and Fodor, {Anthony A.} and Sofia Forslund and Andre Franke and Cesare Furlanello and Jack Gilbert and Elizabeth Grice and Benjamin Haibe-Kains and Scott Handley and Pamela Herd and Susan Holmes and Jacobs, {Jonathan P.} and Lisa Karstens and Rob Knight and Dan Knights and Omry Koren and Kwon, {Douglas S.} and {Genomic Standards Consortium} and {Massive Analysis and Quality Control Society}",
note = "Publisher Copyright: {\textcopyright} 2021, The Author(s), under exclusive licence to Springer Nature America, Inc.",
year = "2021",
doi = "10.1038/s41591-021-01552-x",
language = "English",
volume = "27",
pages = "1885--1892",
journal = "Nature Medicine",
issn = "1078-8956",
publisher = "nature publishing group",
number = "11",

}

RIS

TY - JOUR

T1 - Reporting guidelines for human microbiome research

T2 - the STORMS checklist

AU - Mirzayi, Chloe

AU - Renson, Audrey

AU - Furlanello, Cesare

AU - Sansone, Susanna Assunta

AU - Zohra, Fatima

AU - Elsafoury, Shaimaa

AU - Geistlinger, Ludwig

AU - Kasselman, Lora J.

AU - Eckenrode, Kelly

AU - van de Wijgert, Janneke

AU - Loughman, Amy

AU - Marques, Francine Z.

AU - MacIntyre, David A.

AU - Arumugam, Manimozhiyan

AU - Azhar, Rimsha

AU - Beghini, Francesco

AU - Bergstrom, Kirk

AU - Bhatt, Ami

AU - Bisanz, Jordan E.

AU - Braun, Jonathan

AU - Bravo, Hector Corrada

AU - Buck, Gregory A.

AU - Bushman, Frederic

AU - Casero, David

AU - Clarke, Gerard

AU - Collado, Maria Carmen

AU - Cotter, Paul D.

AU - Cryan, John F.

AU - Demmer, Ryan T.

AU - Devkota, Suzanne

AU - Elinav, Eran

AU - Escobar, Juan S.

AU - Fettweis, Jennifer

AU - Finn, Robert D.

AU - Fodor, Anthony A.

AU - Forslund, Sofia

AU - Franke, Andre

AU - Furlanello, Cesare

AU - Gilbert, Jack

AU - Grice, Elizabeth

AU - Haibe-Kains, Benjamin

AU - Handley, Scott

AU - Herd, Pamela

AU - Holmes, Susan

AU - Jacobs, Jonathan P.

AU - Karstens, Lisa

AU - Knight, Rob

AU - Knights, Dan

AU - Koren, Omry

AU - Kwon, Douglas S.

AU - Genomic Standards Consortium

AU - Massive Analysis and Quality Control Society

N1 - Publisher Copyright: © 2021, The Author(s), under exclusive licence to Springer Nature America, Inc.

PY - 2021

Y1 - 2021

N2 - The particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studies lack key features specific to microbiome studies. Therefore, a multidisciplinary group of microbiome epidemiology researchers adapted guidelines for observational and genetic studies to culture-independent human microbiome studies, and also developed new reporting elements for laboratory, bioinformatics and statistical analyses tailored to microbiome studies. The resulting tool, called ‘Strengthening The Organization and Reporting of Microbiome Studies’ (STORMS), is composed of a 17-item checklist organized into six sections that correspond to the typical sections of a scientific publication, presented as an editable table for inclusion in supplementary materials. The STORMS checklist provides guidance for concise and complete reporting of microbiome studies that will facilitate manuscript preparation, peer review, and reader comprehension of publications and comparative analysis of published results.

AB - The particularly interdisciplinary nature of human microbiome research makes the organization and reporting of results spanning epidemiology, biology, bioinformatics, translational medicine and statistics a challenge. Commonly used reporting guidelines for observational or genetic epidemiology studies lack key features specific to microbiome studies. Therefore, a multidisciplinary group of microbiome epidemiology researchers adapted guidelines for observational and genetic studies to culture-independent human microbiome studies, and also developed new reporting elements for laboratory, bioinformatics and statistical analyses tailored to microbiome studies. The resulting tool, called ‘Strengthening The Organization and Reporting of Microbiome Studies’ (STORMS), is composed of a 17-item checklist organized into six sections that correspond to the typical sections of a scientific publication, presented as an editable table for inclusion in supplementary materials. The STORMS checklist provides guidance for concise and complete reporting of microbiome studies that will facilitate manuscript preparation, peer review, and reader comprehension of publications and comparative analysis of published results.

U2 - 10.1038/s41591-021-01552-x

DO - 10.1038/s41591-021-01552-x

M3 - Review

C2 - 34789871

AN - SCOPUS:85119621141

VL - 27

SP - 1885

EP - 1892

JO - Nature Medicine

JF - Nature Medicine

SN - 1078-8956

IS - 11

ER -

ID: 285944255