Mani Arumugam
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Pairagon+N-SCAN_EST: a model-based gene annotation pipeline
Arumugam, Mani, Wei, C., Brown, R. H. & Brent, M. R., 2006, In: Genome Biology (Online Edition). 7 Suppl 1, p. S5.1-10Research output: Contribution to journal › Journal article › Research › peer-review
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Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner.
Lu, D. V., Brown, R. H., Arumugam, Mani & Brent, M. R., Jul 2009, In: Bioinformatics. 25, 13, p. 1587-1593 7 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Perturbation of gut microbiota decreases susceptibility but does not modulate ongoing autoimmune neurological disease
Gödel, C., Kunkel, B., Kashani, A., Lassmann, H., Arumugam, Mani & Krishnamoorthy, G., 2020, In: Journal of Neuroinflammation. 17, 1, p. 79Research output: Contribution to journal › Journal article › Research › peer-review
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Prognostic performance of 7 biomarkers compared to liver biopsy in early alcohol-related liver disease
Rasmussen, D. N., Thiele, M., Johansen, S., Kjærgaard, M., Lindvig, K. P., Israelsen, M., Antonsen, S., Detlefsen, S., Krag, A., Anastasiadou, E., Arumugam, M., Bork, P., Hansen, T., Hartoft, C., Israelsen, H., Karsdal, M., Legido-Quigley, C., Melberg, H. O., Trebicka, J., Mann, M. & 2 others, , 2021, In: Journal of Hepatology. 75, 5, p. 1017-1025 9 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Quantitative differences in synthetic gut microbial inoculums do not affect the final stabilized in vitro community compositions
Gnanasekaran, Thiyagarajan, Sarathi, Arjun, Fang, Q., Azarm, A., Geraldo, Juliana Assis, Nigro, E. & Arumugam, Mani, 2023, In: mSystems. 8, 4, 16 p., e0124922.Research output: Contribution to journal › Journal article › Research › peer-review
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Recovery of gut microbiota of healthy adults following antibiotic exposure
Palleja, A., Mikkelsen, K. H., Forslund, S. K., Kashani, A., Allin, K. H., Nielsen, T., Hansen, T. H., Liang, S., Feng, Q., Zhang, C., Pyl, P. T., Coelho, L. P., Yang, H., Wang, J., Typas, A., Nielsen, M. F., Nielsen, H. B., Bork, P., Wang, J., Vilsbøll, T. & 4 others, , Nov 2018, In: Nature Microbiology. 3, 11, p. 1255-1265 11 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Reporting guidelines for human microbiome research: the STORMS checklist
Mirzayi, C., Renson, A., Furlanello, C., Sansone, S. A., Zohra, F., Elsafoury, S., Geistlinger, L., Kasselman, L. J., Eckenrode, K., van de Wijgert, J., Loughman, A., Marques, F. Z., MacIntyre, D. A., Arumugam, M., Azhar, R., Beghini, F., Bergstrom, K., Bhatt, A., Bisanz, J. E., Braun, J. & 32 others, , 2021, In: Nature Medicine. 27, 11, p. 1885-1892 8 p.Research output: Contribution to journal › Review › Research › peer-review
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodriguez, A. M., Chase, J., Cope, E. K. & 92 others, , 2019, In: Nature Biotechnology. 37, 8, p. 852-857Research output: Contribution to journal › Letter › Research › peer-review
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Richness of human gut microbiome correlates with metabolic markers
Le Chatelier, E., Nielsen, T., Qin, J., Prifti, E., Hildebrand, F., Falony, G., Almeida, M., Arumugam, M., Batto, J-M., Kennedy, S., Leonard, P., Li, J., Burgdorf, K. S., Grarup, N., Jørgensen, T., Brandslund, I., Nielsen, H. B., Juncker, A., dos Santos, M. B. Q., Levenez, F. & 62 others, , 2013, In: Nature. 500, 7464, p. 541-546 6 p.Research output: Contribution to journal › Journal article › Research › peer-review
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Rifaximin-α for liver fibrosis in patients with alcohol-related liver disease (GALA-RIF): a randomised, double-blind, placebo-controlled, phase 2 trial
Israelsen, M., Madsen, B. S., Torp, N., Johansen, S., Hansen, C. D., Detlefsen, S., Andersen, P., Hansen, J. K., Lindvig, K. P., Rasmussen, D. N., Thorhauge, K. H., Kjærgaard, M., Karsdal, M., Hansen, Torben, Arumugam, Mani, Trebicka, J., Thiele, M., Krag, A. & GALAXY, G., 2023, In: The Lancet Gastroenterology and Hepatology. 8, 6, p. 523-532 10 p.Research output: Contribution to journal › Journal article › Research › peer-review
ID: 41056735
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A human gut microbial gene catalogue established by metagenomic sequencing
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Circulating microbiome in blood of different circulatory compartments
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An Improved Method for High Quality Metagenomics DNA Extraction from Human and Environmental Samples
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